PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01629_BGI-A2_v1.0
Common NameF383_27678
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 544aa    MW: 56151.3 Da    PI: 8.5407
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01629_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056183123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                ++C++C+k F r  nL+ H r H
  Cotton_A_01629_BGI-A2_v1.0 61 FVCEICNKGFQRDQNLQLHRRGH 83
                                89*******************88 PP

2zf-C2H211.10.0012137159123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC +C+k +  +s+ k H + +
  Cotton_A_01629_BGI-A2_v1.0 137 WKCDKCSKKYAVQSDWKAHSKIC 159
                                 58*****************9876 PP

3zf-C2H211.50.00095167185523
                                 TTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                 dCg++Fsr++++ +H   +
  Cotton_A_01629_BGI-A2_v1.0 167 DCGTVFSRRDSFITHRAFC 185
                                 9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.31E-76083No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355190102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.31E-7132157No hitNo description
SMARTSM00355150137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MPVEVDNSST VSGEASVSST GNQNPPPKST VKKKRNLPGM PDPDAEVLAL SPTTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKK VYVCPEPTCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT VFSRRDSFIT  180
HRAFCDALAV ESAKTQTNPS SEPDPKVQAA DSLPPPASPP VSAPSAVTSS DMPIQSSVLA  240
EDPNIVVEKA PAPAPALAPA PPPASLNGSC STSVSLISSG CSSSSGVFSS LFTSSTVSAS  300
IRPPQPPAPA PPSAGLNGSC NRSISLVSSG ASNSSSSGVF ASLFASSTVS ASIQPPQPPA  360
LTNLIRADLA PSTSIEPISL CLSTSHGSSI FGTAGQEHRH HAPSLQPAMS ATALLQKAAQ  420
MGAAASNASL LRGLGIVSSS APQENLQWGQ AQVDPDNASI AAGVGLGLPC DGSSGLKELM  480
MGTPVFGPKQ TTLDFLGLGV AAGGNPNAGL SALITPIGGG FDAATAAASF RGGDYTDKDI  540
GRSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469449.10.0PREDICTED: protein indeterminate-domain 2-like
RefseqXP_012469450.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-178IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A0B0MN020.0A0A0B0MN02_G
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-111indeterminate(ID)-domain 2